Publications 2015

Marie Ballif, Lorna Renner, Jean Claude Dusingize, Valeriane Leroy, Samuel Ayaya, Kara Wools-Kaloustian, Claudia P Cortes, Catherine C McGowan, Claire Graber, Anna M Mandalakas, Lynne M Mofenson, Matthias Egger, Ketut Dewi Kumara Wati, Revathy Nallusamy, Gary Reubenson, Mary-Ann M.-A. Davies, Lukas Fenner, International Epidemiologic Databases to Evaluate AIDS (IeDEA), S. International Epidemiologic Databases to Evaluate AIDS IeDEA, K. Anastos, Marie Ballif, J. Bashi, W. Bishai, A. Boulle, P. Braitstein, G. Carriquiry, J. E. Carter, P. Cegielski, C. Chimbetete, J. Conrad, Claudia P Cortes, Mary-Ann M.-A. Davies, L. Diero, S. Duda, N. Durier, J. C. Dusingize, Matthias Egger, T. F. Eboua, Lukas Fenner, A. Gasser, E. Geng, J. C. Gnokori, L. Hardwicke, C. Hoffmann, R. Huebner, N. Kancheya, S. Kiertiburanakul, P. Kim, D. Lameck, Valeriane Leroy, C. Lewden, M. L. Lindegren, Anna M Mandalakas, M. Maskew, R. McKaig, Lynne M Mofenson, M. Mpoudi-Etame, B. Okwara, S. Phiri, W. Prasitsuebsai, A. Petit, H. Prozesky, S. E. Reid, Lorna Renner, Gary Reubenson, A. Sohn, T. Sterling, Q. Vo, D. Walker, F. Wehbe, C. Wejse, W. Wester, C. Williams, R. Wood, Kara Wools-Kaloustian, Z. Yao, E. Yunihastuti, E. Abrams, J. Ananworanich, K. Anastos, A. Azondekon, M. B. Frieda Behets, A. Boulle, P. Braitstein, P. Cahn, C. Cesar, A. Ciaranello, J. Conrad, F. Dabis, Mary-Ann M.-A. Davies, A. Edmonds, Matthias Egger, L. Feinstein, Claire Graber, L. Hardwicke, R. Hazra, D. Hoover, R. Huebner, O. Keiser, Valeriane Leroy, M. L. Lindegren, M. C. Magneres, Catherine C McGowan, R. McKaig, L. Messerschmidt, Lynne M Mofenson, M. Mpoudi-Etame, H. N. Biribonwoha, G. Sharp, A. Sohn, Q. Vo, R. Vreeman, D. Walker, F. Wehbe, W. Wester, C. Williams, Kara Wools-Kaloustian, C. Worrell, C. Yiannoutsos, B. Zwickl (2015) Tuberculosis in Pediatric Antiretroviral Therapy Programs in Low- and Middle-Income Countries: Diagnosis and Screening Practices., Journal of the Pediatric Infectious Diseases Society 4(1), p. 30-8, url, doi:10.1093/jpids/piu020

Manuel Koller, Kunjal Patel, Benjamin H Chi, Kara Wools-Kaloustian, Fatoumata Dicko, Kulkanya Chokephaibulkit, Cleophas Chimbetete, Dorita Avila, Rohan Hazra, Samual Ayaya, Valeriane Leroy, Huu Khanh Truong, Matthias Egger, Mary-Ann Davies, IeDEA, NISDI, PHACS and IMPAACT 219C studies (2015) Immunodeficiency in children starting antiretroviral therapy in low-, middle-, and high-income countries., Journal of acquired immune deficiency syndromes (1999) 68(1), p. 62-72, url, doi:10.1097/QAI.0000000000000380

Manuel Koller, Geoffrey Fatti, Benjamin H Chi, Olivia Keiser, Christopher J Hoffmann, Robin Wood, Hans Prozesky, Kathryn Stinson, Janet Giddy, Portia Mutevedzi, Matthew P Fox, Matthew Law, Andrew Boulle, Matthias Egger (2015) Implementation and Operational Research: Risk Charts to Guide Targeted HIV-1 Viral Load Monitoring of ART: Development and Validation in Patients From Resource-Limited Settings., Journal of acquired immune deficiency syndromes (1999) 70(3), p. e110-9, url, doi:10.1097/QAI.0000000000000748

Manuel Koller, Kunjal Patel, Benjamin H Chi, Kara Wools-Kaloustian, Fatoumata Dicko, Kulkanya Chokephaibulkit, Cleophas Chimbetete, Rohan Hazra, Samual Ayaya, Valeriane Leroy, Huu Khanh Trong, Matthias Egger, Mary-Ann Davies, IeDEA, NISDI, PHACS and IMPAACT 219C Studies (2015) Authors' Reply: Early Initiation of Antiretroviral Therapy Among Young Children: A Long Way to Go., Journal of acquired immune deficiency syndromes (1999) 70(2), p. e71-2, url, doi:10.1097/QAI.0000000000000773

Manuel Koller, Keri N Althoff, Mary-Ann Davies, Matthias Egger (2015) Authors' reply: immunodeficiency at the start of combination antiretroviral therapy: steady improvement or step changes?, Journal of acquired immune deficiency syndromes (1999) 68(1), p. e16-7, url, doi:10.1097/QAI.0000000000000399

Marcel Yotebieng, Tammy Meyers, Frieda Behets, Mary-Ann Davies, Olivia Keiser, Kapella Zacharia Ngonyani, Rita E Lyamuya, Azar Kariminia, Rawiwan Hansudewechakul, Valeriane Leroy, Sikiratou Koumakpai, Jamie Newman, Annelies Van Rie (2015) Age-specific and sex-specific weight gain norms to monitor antiretroviral therapy in children in low-income and middle-income countries., AIDS (London, England) 29(1), p. 101-9, url, doi:10.1097/QAD.0000000000000506

Mireille Porter, Mary-Ann Davies, Muntanga K. Mapani, Helena Rabie, Sam Phiri, James Nuttall, Lee Fairlie, Karl-Günter Technau, Kathryn Stinson, Robin Wood, Maureen Wellington, Andreas D. Haas, Janet Giddy, Frank Tanser, Brian Eley (2015) Outcomes of Infants Starting Antiretroviral Therapy in Southern Africa, 2004-2012., JAIDS Journal of Acquired Immune Deficiency Syndromes 69(5), p. 593-601, url, doi:10.1097/QAI.0000000000000683

Elvin H Geng, Torsten B Neilands, Rodolphe Thièbaut, Mwebesa Bosco Bwana, Denis Nash, Richard D Moore, Robin Wood, Djimon Marcel Zannou, Keri N Althoff, Poh Lian Lim, Jean B Nachega, Philippa J Easterbrook, Andrew Kambugu, Francesca Little, Gertrude Nakigozi, Damalie Nakanjako, Valerian Kiggundu, Patrick Chung Ki Li, David R Bangsberg, Matthew P Fox, HansW Prozesky, Peter W Hunt, Mary-Ann Davies, Steven J Reynolds, Matthias Egger, Constantin T Yiannoutsos, Eric V Vittinghoff, Steven G Deeks, Jeffrey N Martin (2015) CD41 T cell recovery during suppression of HIV replication: an international comparison of the immunological efficacy of antiretroviral therapy in North America, Asia and Africa., International journal of epidemiology 44(1), p. 251-63, pubmed

Nello Blaser, Luisa Salazar Vizcaya, Janne Estill, Cindy Zahnd, Bindu Kalesan, Matthias Egger, Thomas Gsponer, Olivia Keiser (2015) gems: An R Package for Simulating from Disease Progression Models., Journal of statistical software 64(10), p. 1-22, pubmed

David Stucki, Marie Ballif, Thomas Bodmer, Mireia Coscolla, Anne-Marie Maurer, Sara Droz, Christa Butz, Sonia Borrell, Christel Längle, Julia Feldmann, Hansjakob Furrer, Carlo Mordasini, Peter Helbling, Hans L Rieder, Matthias Egger, Sébastien Gagneux, Lukas Fenner (2015) Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing., The Journal of infectious diseases 211(8), p. 1306-16, url, doi:10.1093/infdis/jiu601

Julia Bohlius, Mhairi Maskew, Mary-Ann Davies, Matthias Egger (2015) HHV-8 seroprevalence in HIV-positive and HIV-negative populations., International journal of cancer 136(5), p. 1243, url, doi:10.1002/ijc.29183

Matthias Egger, Leigh F Johnson (2015) Estimating trends in life expectancy in HIV-positive individuals., The Lancet. Global health 3(3), p. e122-3, url, doi:10.1016/S2214-109X(14)70383-3

Richard G White, Avi J Hakim, Matthew J Salganik, Michael W Spiller, Lisa G Johnston, Ligia Kerr, Carl Kendall, Amy Drake, David Wilson, Kate Orroth, Matthias Egger, Wolfgang Hladik (2015) Strengthening the Reporting of Observational Studies in Epidemiology for respondent-driven sampling studies: "STROBE-RDS" statement., Journal of clinical epidemiology 68(12), p. 1463-71, url, doi:10.1016/j.jclinepi.2015.04.002

Lyson Tenthani, Andreas D Haas, Matthias Egger, Joep J Van Oosterhout, Andreas Jahn, Frank Chimbwandira, Kali Tal, Landon Myer, Janne Estill, Olivia Keiser (2015) Brief Report: HIV Testing Among Pregnant Women Who Attend Antenatal Care in Malawi., Journal of acquired immune deficiency syndromes (1999) 69(5), p. 610-4, url, doi:10.1097/QAI.0000000000000669

Janne Estill, Luisa Salazar-Vizcaya, Nello Blaser, Matthias Egger, Olivia Keiser (2015) The cost-effectiveness of monitoring strategies for antiretroviral therapy of HIV infected patients in resource-limited settings: software tool., PloS one 10(3), Alash'le G. Abimiku (ed.), p. e0119299, url, doi:10.1371/journal.pone.0119299

Mazvita Sengayi, Chantal Babb, Matthias Egger, Margaret I Urban (2015) HIV testing and burden of HIV infection in black cancer patients in Johannesburg, South Africa: a cross-sectional study., BMC cancer 15(1), p. 144, url, doi:10.1186/s12885-015-1171-7

Daniel M Brown, Maya Petersen, Sadie Costello, Elizabeth M Noth, Katherine Hammond, Mark Cullen, Mark van der Laan, Ellen Eisen (2015) Occupational Exposure to PM2.5 and Incidence of Ischemic Heart Disease: Longitudinal Targeted Minimum Loss-based Estimation., Epidemiology (Cambridge, Mass.) 26(6), p. 806-14, url, doi:10.1097/EDE.0000000000000329

Olivia Keiser, Nello Blaser, Mary-Ann Davies, Patrick Wessa, Brian Eley, Harry Moultrie, Helena Rabie, Karl-Günther Technau, James Ndirangu, Daniela Garone, Janet Giddy, Ashraf Grimwood, Thomas Gsponer, Matthias Egger, for IeDEA Southern Africa (2015) Growth in Virologically Suppressed HIV-Positive Children on Antiretroviral Therapy: Individual and Population-level References., The Pediatric infectious disease journal 34(10), p. e254-9, url, doi:10.1097/INF.0000000000000801

Michael Schomaker, Sara Hogger, Leigh F Johnson, Christopher J Hoffmann, Till Bärnighausen, Christian Heumann (2015) Simultaneous Treatment of Missing Data and Measurement Error in HIV Research Using Multiple Overimputation., Epidemiology (Cambridge, Mass.) 26(5), p. 628-36, url, doi:10.1097/EDE.0000000000000334

Sabine Hermans, C Robert Horsburgh, Robin Wood (2015) A Century of Tuberculosis Epidemiology in the Northern and Southern Hemisphere: The Differential Impact of Control Interventions., PloS one 10(8), Keertan Dheda (ed.), p. e0135179, url, doi:10.1371/journal.pone.0135179

Michael J Vinikoor, Samuel Zürcher, Kalo Musukuma, Obert Kachuwaire, Andri Rauch, Benjamin H Chi, Meri Gorgievski, Marcel Zwahlen, Gilles Wandeler (2015) Hepatitis B viral load in dried blood spots: A validation study in Zambia., Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 72, p. 20-4, url, doi:10.1016/j.jcv.2015.08.019

Diana Huisin ʼt Veld, Eric Balestre, Jozefien Buyze, Joris Menten, Antoine Jaquet, David A Cooper, Francois Dabis, Constantin T Yiannoutsos, Lameck Diero, Portia Mutevedzi, Matthew P Fox, Eugene Messou, Christopher J Hoffmann, Hans W Prozesky, Matthias Egger, Jennifer J Hemingway-Foday, Robert Colebunders, International Epidemiologic Databases to Evaluate AIDS (IeDEA) (2015) Determinants of Weight Evolution Among HIV-Positive Patients Initiating Antiretroviral Treatment in Low-Resource Settings., Journal of acquired immune deficiency syndromes (1999) 70(2), p. 146-54, url, doi:10.1097/QAI.0000000000000691

Mary-Ann Davies, Nathan Ford, Helena Rabie, Geoffrey Fatti, Kathryn Stinson, Janet Giddy, Frank Tanser, Karl-Günter Technau, Shobna Sawry, Brian Eley, Robin Wood, Lynne M Mofenson, Olivia Keiser, Andrew Boulle (2015) Reducing CD4 Monitoring in Children on Antiretroviral Therapy With Virologic Suppression., The Pediatric infectious disease journal 34(12), p. 1361-4, url, doi:10.1097/INF.0000000000000912

Sabine Hermans, Andrew Boulle, Judy Caldwell, David Pienaar, Robin Wood (2015) Temporal trends in TB notification rates during ART scale-up in Cape Town: an ecological analysis, Journal of the International AIDS Society 18(1), url, doi:10.7448/IAS.18.1.20240

Andreas D Haas, Olivia Keiser, Eric Balestre, Steve Brown, Emmanuel Bissagnene, Cleophas Chimbetete, François Dabis, Mary-Ann Davies, Christopher J Hoffmann, Patrick Oyaro, Rosalind Parkes-Ratanshi, Steven J Reynolds, Izukanji Sikazwe, Kara Wools-Kaloustian, D Marcel Zannou, Gilles Wandeler, Matthias Egger, IeDEA southern Africa, east Africa, and west Africa (2015) Monitoring and switching of first-line antiretroviral therapy in adult treatment cohorts in sub-Saharan Africa: collaborative analysis., The lancet. HIV 2(7), p. e271-8, url, doi:10.1016/S2352-3018(15)00087-9

Morna Cornell, Leigh F Johnson, Michael Schomaker, Frank Tanser, Mhairi Maskew, Robin Wood, Hans Prozesky, Janet Giddy, Kathryn Stinson, Matthias Egger, Andrew Boulle, Landon Myer, International Epidemiologic Databases to Evaluate AIDS-Southern Africa Collaboration (2015) Age in antiretroviral therapy programmes in South Africa: a retrospective, multicentre, observational cohort study., The lancet. HIV 2(9), p. e368-75, url, doi:10.1016/S2352-3018(15)00113-7

Leigh F Johnson, Rob E Dorrington, Ria Laubscher, Christopher J Hoffmann, Robin Wood, Matthew P Fox, Morna Cornell, Michael Schomaker, Hans Prozesky, Frank Tanser, Mary-Ann Davies, Andrew Boulle (2015) A comparison of death recording by health centres and civil registration in South Africans receiving antiretroviral treatment, Journal of the International AIDS Society 18(1), url, doi:10.7448/IAS.18.1.20628